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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCTGCTGAAAAAGCTCAAGAATGCTCAATGCATCCATCAACTCACTTTCAGTGATGATCAAGACCCCCACAATACATACTTCTATAAGCTTTGCAAGgtaccaagtctctctggagtaactcagaccgttcaactcgttgctgattttgccatattctattttcatcaagatgaatttacatttaactattgctctttttgttcatacag

Basic information

species Zea mays
transcript GRMZM2G176042_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176042_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 5'ss of exon 12
CTGGCTGCTGAAAAAGCTCAAGAATGCTCAATGCATCCATCAACTCACTTTCAGTGATGATCAAGACCCCCACAATACATACTTCTATAAGCTTTGCAAGgtaccaagtctctctggagtaactcagaccgttcaactcgttgctgattttgccatattctattttcatcaagatgaatttacatttaactattgctctttttgttcat--acag
|||||| || ||||||||||||   || || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||     || | ||    |   |      || ||    ||       | ||        |  | |||       |||||  |  | | || || |  ||| |  || |   |||
CTGGCTTCTAAAAAAGCTCAAGGGAGCACAGTGCATCCATCAACTCACTTTCAGTGATGATCAAGACCCCCAGAATACATTCTTTTATAAACTTTGTAAGgtatggtatcaccctctgcttcgttctgtagtgcattcagtaatcctatctgttgcgaatttatatcagatcttagaattggccataagctgttcccttttataatccttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32868550|gb|CF008232.1|CF008232
EST:     TCAGTGATGATCAAGACCCCCACAATACATACTTCTATAAGCTTTGCAAG                         TTGAAAACATTGGAGAACTTCAAAAATATCATATTGTTATCATCACCACAG
genomic: TCAGTGATGATCAAGACCCCCACAATACATACTTCTATAAGCTTTGCAAGgtaccaagtc ... gttcatacagTTGAAAACATTGGAGAACTTCAAAAATATCATATTGTTATCATCACCACAG