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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTGAGGATTCACACGAGGTGCAATCGGCTGCCAGGAAGCTGAATCTGAACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGGgtacaaaccagaactactcagctcagttgccgttttcttaaacatctgtctgcctgcctatatggcacggtgttatatcattgtcttgtcgatttgattgtctgtccccatgttccgtttccag

Basic information

species Zea mays
transcript GRMZM2G175453_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175453_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g05990.1 (Oryza sativa), 5'ss of exon 6
ACGGTGAGGATTCACACGAGGTGCAATCGGCTGCCAGGAAGCTGAATCTGAACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGGgtacaaaccagaactactcagctcagttgccgttttcttaaacatctgtctgcctgcctatatggcacggtgttatatcattgtcttgtcgatttgattgtctgtccccatgttccgtttccag
| ||||| |||||||| ||||||||||| || || | |||| |||| || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||| |  ||||   |   || | | ||| ||  ||||| |     |   ||  | | | | | ||      || | || |   ||                              
ATGGTGAAGATTCACATGAGGTGCAATCAGCGGCTATGAAGTTGAACCTAAACCTTAACTTTCATAAAGGCCGGGATCATGCGGATGATTCTCTTCATGGgtaaaagacagagcctctcactgc--ctgacatcttccta--catctttagatatagttaatttgaatgtttttcc--tgttttttttttctttcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116818177|gb|EC861159.1|EC861159
EST:     TCTCTTCATGG                         GTACAA-GTTTTCATAAACCCAAGCATCAGCGACGT-CTCTGCACCGCGAC
genomic: TCTCTTCATGGgtacaaacca ... ccgtttccagGTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGAC
EST: gi|91872681|gb|EB402638.1|EB402638
EST:     AACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGG                         GTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGAC
genomic: AACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGGgtacaaacca ... ccgtttccagGTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGAC
EST: gi|149072357|gb|EE160627.2|EE160627
EST:     AACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGG                         GTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGAC
genomic: AACCTCAACTTTCATAAGGGCCGGGACCATGCGGATGATTCTCTTCATGGgtacaaacca ... ccgtttccagGTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGAC