1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTATGGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatgctttgttaagcactgatttgattgcatcttgtgtaatttaatatactgataatacttagtgtttcctttgaag
species | Zea mays |
transcript | GRMZM2G174990_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGEST: gi|31353713|gb|CD438070.1|CD438070
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGEST: gi|211480218|gb|FK977823.1|FK977823
genomic: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGEST: gi|211485991|gb|FK977851.1|FK977851
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTGEST: gi|60351666|gb|DN218639.1|DN218639
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAA
genomic: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTATGGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatgctttgttaagcactgatttgattgcatcttgtgtaatttaatatactgataatacttagtgtttcctttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA