1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatattggccatcaatttattcttgcatttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaacttgcttttatgcat...
species | Zea mays |
transcript | GRMZM2G174644_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTEST: gi|31349767|gb|CD434124.1|CD434124
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGT
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|211409590|gb|FL109891.1|FL109891
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|78025234|gb|DV493621.1|DV493621
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|211409591|gb|FL109892.1|FL109892
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: AGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|50328677|gb|CO523803.1|CO523803
genomic: AGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAEST: gi|5915088|gb|AW052729.1|AW052729
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGA
EST: GTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGGGCAGCGGAAGAACCEST: gi|211409595|gb|FL109896.1|FL109896
genomic: GTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: AGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAA-CEST: gi|5499280|gb|AI855147.1|AI855147
genomic: AGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGG GGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
genomic: ACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatatt ... aacatttcagGGCTGGCCGTTACGAGGTGGATGGGTATGTGTACAGTGCAGCGGAAGAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatattggccatcaatttattcttgcatttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaacttgcttttatgcat
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