1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctctctctctccccacatcctttctgcaattgcttttgcaaccttacatcattgtaatgctcaagtgcttcaaaggagtatagctgatgaagtaagttcatctctgcag
species | Zea mays |
transcript | GRMZM2G174284_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATG GAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATAEST: gi|61118940|gb|DN559901.1|DN559901
genomic: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATA
EST: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGCGGAAATG GAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATAEST: gi|32839992|gb|CD979673.1|CD979673
genomic: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATA
EST: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATG GAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATAEST: gi|32839993|gb|CD979674.1|CD979674
genomic: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATA
EST: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATG GAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATA
genomic: AATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAAGAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATCTTCATATCCAGTTCTGGAGATCAAACTCATGCTATGAGTGGAAATGgtaaactctctctctctccccacatcctttctgcaattgcttttgcaaccttacatcattgtaatgctcaagtgcttcaaaggagtatagctgatgaagtaagttcatctctgcag
- - - - - - - - - - TGGAGA
- - - - - - - - - - GGAGAT
- - - - - - - - - - - GAGATC
- - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - AGTGGA