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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACATCAACGGCTGGTGGTGGTACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTGgtaattcttaatatgtgtaattgtgcaacattttctacatgtaaaccatgactgtctttttttttgtggtttatgttgaccagttaatatgcaggggata...

Basic information

species Zea mays
transcript GRMZM2G173868_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 7
ATAACATCAACGGCTGGTGGTGGTACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTGgtaattctt---aatatgtgtaattgtgcaacattttctacatgtaaaccatgactgtctttttttttgtggtttatgttgaccagttaatatgcaggggata-
||||| ||||| ||||||||||| ||||||||||||||||||||  |  ||||||| ||||||||| |||  ||| | | ||   ||||| |   |||||  || || |     || | |   ||  ||   || ||           ||    ||||  |  ||   ||| |    
ATAACTTCAACAGCTGGTGGTGGCACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattgacaatatattatattgttgaagatctct---atatcatgtatt-ctacattattacacaactacaatagctaccatgtgctagaaaggtgcccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445066|gb|DR826116.1|DR826116
EST:     TACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTG                         TTTTTGAGCGAGTTACAAAAAA-TCAGTGCGTGGAATATGGTCACGCAGAT
genomic: TACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTGgtaattctta ... ctttttgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGAT
EST: gi|211525689|gb|FK990909.1|FK990909
EST:     TACTTTGACACTGGGATTTGGCATATTGAGTCGCTTGACTAATAATACTG                         TTTTTGAGCGAGTAACAAAAAA-TCAGTGCGTGGGATATGG
genomic: TACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTGgtaattctta ... ctttttgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGG