1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAGGAGAAAATCAAGTGGGCTGACACAATGAGTGAGGTGAACAAGAAGCACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctggattgaattgaagcatttggtcttagtaagattgaagaaaaaggaataaatttgcatattcttgtgatgagttatgctctgttatcctcatt...
species | Zea mays |
transcript | GRMZM2G171745_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTTTGAATCTGGAGGAEST: gi|86472724|gb|DY239094.1|DY239094
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAEST: gi|32809485|gb|CD961719.1|CD961719
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCC-AAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAEST: gi|50339562|gb|CO534688.1|CO534688
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: AGAAAGAATTTGAAGACAGAGTGGAAGAGGCCNNNNNNNTCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAEST: gi|60340320|gb|DN207293.1|DN207293
genomic: AGAAAGAATTTGAAGACAGAGTGGAAGAGGCC-AAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAEST: gi|74242378|gb|DT650292.1|DT650292
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAEST: gi|78118433|gb|DV536819.1|DV536819
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGCAGEST: gi|67021266|gb|CO450015.1|CO450015
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATC-A--AGgtgagctgga ... atttaagc
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAG-CTCTCTCTGAATCTGGAGGAEST: gi|76931005|gb|DV172591.1|DV172591
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAG GCAGACATTGACTTACGGGGGCATGACGAGTTTCTTTTTGAATCTGGAGGAEST: gi|211192853|gb|FL432744.1|FL432744
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctgga ... atttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGA
EST: ACCAGAAAGAATTTGAAGACAGAKTGGAAGAGGCCAAAAAATCAATCAAGCAG
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATC-A--AGgtgagctgga ... atttaagc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGAGAAAATCAAGTGGGCTGACACAATGAGTGAGGTGAACAAGAAGCACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATCAAGgtgagctggattgaattgaagcatttggtcttagtaagattgaagaaaaaggaataaatttgcatattcttgtgatgagttatgctctgttatcctcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataaa