1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGGGAAATTGTCCGAAGGGTCTTGCTAAAAATGGCTCAGGATGCTTCTCTTTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAGgtatggcattctagtaacagttcagtagtttgtactgctatttggattccttttctaatggcaccaacttttaaaaaaaaatgaagatctgctacatatt...
species | Zea mays |
transcript | GRMZM2G171373_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAG AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAACEST: gi|71757200|gb|DR955137.1|DR955137
genomic: CTTTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAGgtatggcatt ... tgaattctagAACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAAC
EST: GTCCCATATATCCTTAG AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAACEST: gi|78089618|gb|DV517992.1|DV517992
genomic: GTCCCATATATCCTTAGgtatggcatt ... tgaattctagAACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAAC
EST: C-TTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAG AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAACEST: gi|78087465|gb|DV515858.1|DV515858
genomic: CTTTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAGgtatggcatt ... tgaattctagAACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAAC
EST: CAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAG AACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAAC
genomic: CAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAGgtatggcatt ... tgaattctagAACATATCACGTGCTGATGATGCATCAAGACACATCGCCTGATCTCAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGGAAATTGTCCGAAGGGTCTTGCTAAAAATGGCTCAGGATGCTTCTCTTTTCTCAGATAATGTACCTCTGGAACTTGAGGTCCCATATATCCTTAGgtatggcattctagtaacagttcagtagtttgtactgctatttggattccttttctaatggcaccaacttttaaaaaaaaatgaagatctgctacatatt
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