1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGGGAAGTGAGTACAATGATAATGAGATGGCGAGGATGATAGCCTGCGCAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAGgtatacaagtgaacaactattctctgtctagtttcagttattcggtaggaataacaaataagaggtgccaacaccgattcaggttttcagtatgacagag...
species | Zea mays |
transcript | GRMZM2G170035_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCATGCGTCCGGCATTCTTCACGGCGGCCGGC-ACGGATGGGTCAG GTCGTCCGGGCGCTGGAAAGCGACGTATCTCTGGACGACCTGAACGAGGGCEST: gi|71763635|gb|DR961572.1|DR961572
genomic: AGCTGCATGCGTCCGGCATTCTTCACGGCGGC-GGCCACGGATGGGTCAGgtatacaagt ... atccacgcagGTCGTCCGGGCGCTGGAAGGCGACGTATCTCTGGACGACCTGAACGAGGGC
EST: CAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAG GTCGTCCGGGCGCTGGAAGGCGACGTATCTCTGGACGACCTGAACGAGGGCEST: gi|149101285|gb|EE187398.2|EE187398
genomic: CAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAGgtatacaagt ... atccacgcagGTCGTCCGGGCGCTGGAAGGCGACGTATCTCTGGACGACCTGAACGAGGGC
EST: CAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAG GTCGTCCGGGCGCTGGAAGGCGACGTATCTCTGGACGACCTGAACGAGGGC
genomic: CAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAGgtatacaagt ... atccacgcagGTCGTCCGGGCGCTGGAAGGCGACGTATCTCTGGACGACCTGAACGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGGAAGTGAGTACAATGATAATGAGATGGCGAGGATGATAGCCTGCGCAGCTGCATGCGTCCGGCATTCTTCACGGCGGCGGCCACGGATGGGTCAGgtatacaagtgaacaactattctctgtctagtttcagttattcggtaggaataacaaataagaggtgccaacaccgattcaggttttcagtatgacagag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataacaa