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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTCTTACAAATGCAAAAGGATATCCTTGTTTATCAAAGCGCCATCAGAGTCTGCTAACTGGATTTTTTAAACATTCTGTTCAGgtttgttatttttattgcttttatgcttacgcttagtcaacctttgtattttcatatcttcagagtcaatgatccaatgttgtatgcttcttttaacttgtttttttaatatatattcaattttgtgcttcaattgaggtaattgtggtgggcattgttcttgagttcttttttgtcctatttag

Basic information

species Zea mays
transcript GRMZM2G169927_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169927_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 5'ss of exon 7
GCTTTTCTTACAAATGCAAAAGGATATCCTTGTTTATCAAAGCGCCATCAGAGTCTGCTAACTGGATTTTTTAAACATTCTGTTCAGgtttgttatttttattgcttttatgcttacgcttagtcaacctttgtattttcatatcttcagagtcaatgatccaatgt--tgtatgcttc--ttttaacttgtttttttaatatatattcaattttgtgcttcaattgaggtaattgtggtgggcattgttcttgagttcttttttgtcctatttag
|||||||| |||||||| | ||| ||||||||  | ||||||||||| ||||  ||||| |||||||||||||| ||||| |||||||| ||||             || ||||| |   ||   | |||||    | | || | ||| |    ||  | ||||||    |  ||| ||  |||  | |     ||| ||     ||   | | |    ||    |  | |  ||          || ||||| ||                    
GCTTTTCTGACAAATGCCAGAGGTTATCCTTGCCTGTCAAAGCGCCACCAGAAGCTGCTTACTGGATTTTTTAACCATTCGGTTCAGgtgtgtt-----------ccttgtgcttccttctatcaagcctttcctctcttatcttttctg--ctaagaacccaatgcacagggtgcctccatttccattccaaatttcaaagggcatcttactgtaccttttctctcggattttt-caccctctgtttttctttag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354779|gb|CD439136.1|CD439136
EST:     CAAAGCGCCATCAGAGTCTGCTAACTGGATTTTTTAAACATTCTGTTCAG                         GTGATAATATCTGGAAGATCAAATCACAATGTTTTCCCAGTATCTGAAGGA
genomic: CAAAGCGCCATCAGAGTCTGCTAACTGGATTTTTTAAACATTCTGTTCAGgtttgttatt ... tcctatttagGTGATAATATCTGGAAGATCAAATCACAATGTTTTCCCAGTATCTGAAGGA