1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataatccgttgttctgttgtcctgtactgttcataagtttgaatatatttgtaggtgttagtgctatactctaaaggcaacccagataattactt...
species | Zea mays |
transcript | GRMZM2G168176_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCCCAATCAG ATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTGEST: gi|211444557|gb|FL439819.1|FL439819
genomic: CCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
EST: GTGGTCCTACATGGTATGAGAACCCATAACCTAACATTTCCCCCAATCAG -TCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTGEST: gi|76289777|gb|DV029345.1|DV029345
genomic: GTGGTCCTACATGGTATGAGAACCCAT-A-CT-ACATTTCCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
EST: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAG ATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTGEST: gi|60336677|gb|DN203650.1|DN203650
genomic: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
EST: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAG ATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTGEST: gi|89249178|gb|DY620964.1|DY620964
genomic: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
EST: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAG ATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTGEST: gi|14203242|gb|BG836919.1|BG836919
genomic: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
EST: TTGGTGGTCCTACATGGTATGAGAACCCATACTMCATTTCCCCCAATCAG ATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
genomic: TTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataat ... gttccttcagATCCGTGCACTAGAGAAGAGGCAGAAGGCAGGCAAATATGCCAAGAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgtgataatccgttgttctgttgtcctgtactgttcataagtttgaatatatttgtaggtgttagtgctatactctaaaggcaacccagataattactt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggcaa