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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCCGAGTGTGGGATCCGAGGACAGGATCGAAAAACATGAAATTGAGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtctaggcatttttcaaatgagttcttgtagattcatctaggctatgctgctctagttccttggcattgcttaaaaattgatcttcatcttcct...

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 7
GTTGTCCGAGTGTGGGATCCGAGGACAGGATCGAAAAACATGAAATTGAGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtctaggcatttttcaaatgagttcttgtagattcatctaggctatgctgctctagttccttggcattg--cttaaaaattgatcttcatcttcct------------
||||| || || |||||||| ||||| || || || || |||||||||||||||||||||||||||||||| || || ||| ||||| |||| || ||||| ||||             |||||  ||||||||||||||||||| | ||| || |    ||||||| || |   | | ||||||||  |   |   | |            
GTTGTTCGCGTTTGGGATCCCAGGACTGGTTCAAAGAAAATGAAATTGAGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtg------------aaatg--ttcttgtagattcatctagacaatgatgtttcttttccttgacaatatcccttaaaattgacttctgttcccgtattgctgcccca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433407|gb|DR814457.1|DR814457
EST:     AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAG                         GTATTGCCTATCGGGATCATCTGATTCAATGATAAG
genomic: AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtct ... atgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAG
EST: gi|18385199|gb|BM418398.1|BM418398
EST:     AGAGGGCACNCTG-CAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAG                         GTATTGCCTATCGGGATCATCTGATTCAATGATAAG-CTATGG
genomic: AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtct ... atgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAGACTATGG