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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgttagcatcaatgcatttcaaaatcatttgtgtgttagttccttcagtttcttttctgttctctttttctgttgagaaaagctatatgttttctttcttcatcattgttttgtgtcttttaatcatgtttcaacgggtcatatatctaaattatatcgtcccattttag

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167932_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g03890.2 (Oryza sativa), 5'ss of exon 7
GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgttagcatcaatgcatttcaaaatcatttgtgtg---ttagttccttcagtttcttttctgttctctttttctgttgagaa-aagctatatgttttctttcttcatcattgttttgtgtcttttaatcatgtttcaacgggtcatatatctaaattatatcgtcccattttag
||||| || ||||| ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||| |     |  ||||   |  |||   |  |||   ||   | | | |||||  |    ||| |||   | |  ||  || | |  ||  |  |||  |                                                                              
GAGACCGGAGGCTACTATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaactgt-tcaacaaaactcacttttttttacatgcattaaataccttc--tccaatttgtgtgtgcatactcctttaaaatcaaatttaatgcatat----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351085|gb|CD435442.1|CD435442
EST:     ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG                         GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
genomic: ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgtta ... cccattttagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
EST: gi|31354051|gb|CD438408.1|CD438408
EST:     ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG                         GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
genomic: ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgtta ... cccattttagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
EST: gi|22542391|gb|BU092829.1|BU092829
EST:     ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACCCAATGCGTTAAAG                         GCTTCACCCATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
genomic: ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgtta ... cccattttagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
EST: gi|8367891|gb|BE050836.1|BE050836
EST:     ATGCTTTCG-GGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG                         GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
genomic: ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgtta ... cccattttagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
EST: gi|32847652|gb|CD987333.1|CD987333
EST:     ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG                         GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG
genomic: ATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAGgtgactgtta ... cccattttagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGAGGAAG