1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTTTTAGTTGAGGAGATAGATTTGGGAGATGGTAATGTGCGTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAGATGATCTTACTgtgagtagttagctgcaagaaggaactcaaattgtttttgaccattttctctctcatttaagatgtttgacctatgttgctgtgttttgctatgaacacctgtctgtcgttttcttctttcag
species | Zea mays |
transcript | GRMZM2G166345_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAGATGATCTTACT AATCGGCATGTTGTCTTGATCACGAATGTGAAGCCTGGAAAGCTGCGAGATEST: gi|67022300|gb|CO451049.1|CO451049
genomic: GTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAGATGATCTTACTgtgagtagtt ... cttctttcagAATCGGCATGTTGTCTTGATCACGAATGTGAAGCCTGGAAAGCTGCGAGAT
EST: GTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAAATGATCTTACT AATCG-CATGTTGTCTTGAEST: gi|166465899|gb|EG190327.1|EG190327
genomic: GTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAGATGATCTTACTgtgagtagtt ... cttctttcagAATCGGCATGTTGTCTTGA
EST: TTGCAAAGTATTGCAGCCCAGATGATCTTACT AATCGGCATGTTGTCTTGATCACGAATGTGAAGCCTGGAAAGCTGCGAGAT
genomic: TTGCAAAGTATTGCAGCCCAGATGATCTTACTgtgagtagtt ... cttctttcagAATCGGCATGTTGTCTTGATCACGAATGTGAAGCCTGGAAAGCTGCGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTTTAGTTGAGGAGATAGATTTGGGAGATGGTAATGTGCGTCAAGTTGTTAGTGGTCTTGCAAAGTATTGCAGCCCAGATGATCTTACTgtgagtagttagctgcaagaaggaactcaaattgtttttgaccattttctctctcatttaagatgtttgacctatgttgctgtgttttgctatgaacacctgtctgtcgttttcttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG