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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaactaacatgcttgtcttaagttcattgctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag

Basic information

species Zea mays
transcript GRMZM2G166091_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166091_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCCGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaactaacatgcttgtcttaagttcattgct-----------caatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctgcag
|||||  ||| ||||  |||||||||||||||||||||||||||  || ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  || | |  |  |||  | || ||||||  |           |||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   ||||||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag

upper sequence: GRMZM2G166091_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCCGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaactaacatgcttgtcttaagt--tcattgctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag
||||  ||  |||||  | ||| ||||||||||||| ||  | |  || || || ||||||||||||||||||||||||||   ||||||  | |||||||||        ||   |    |  |||| | |   | ||  |    | | ||||  |||  |  |      ||| |  |||      ||  |     | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag