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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttcggtgcaattggtctgtctgtctgtcactccacctgatgtaatgtattttacag

Basic information

species Zea mays
transcript GRMZM2G166035_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g05630.4 (Oryza sativa), 5'ss of exon 6
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttc------------ggtgcaattggt-ctgtctgtctgtcactc--cacctgatgt---aatgtattttacag
|||||| | ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |||  ||||| | |||||  || ||  |  ||||||||            | ||| |||||  |  | | | ||| ||||   || |||      |||    ||| |||
GAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttga-gtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccag

upper sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g05630.3 (Oryza sativa), 5'ss of exon 6
-------------------------GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttc------------ggtgcaattggt-ctgtctgtctgtcactc--cacctgatgt---aatgtattttacag
                         |||||| | ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |||  ||||| | |||||  || ||  |  ||||||||            | ||| |||||  |  | | | ||| ||||   || |||      |||    ||| |||
GAAATGCATCTTGTTTTATTTACAGGAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttga-gtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccag

upper sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 7
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttcggtgcaattggtctgtctgtctgtcact-ccacctgatgtaat-gtattttacag------------------
|| ||     | |||||||||||||| || || || || || || ||||| || |||||||||||||| |||||||| |  || ||||||   |  | |   | | | ||       |   ||    | |||    |||   | ||||  | |   |  ||                  
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgc--actgatgtt--catttcttctcattgatgactaaaatgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaagataaaccaaa

upper sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttcggtgcaattggtctgtctgtctgtcact-ccacctgatgtaat-gtattttacag------------------
|| ||    || |||||||||||||| || || || || || || ||||| || |||||||||||| ||||||||||   ||| ||||||     || ||| ||        | |     |  | |   |||   ||||   | |||   | |   |  ||                  
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgtt----catttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac

upper sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatct----ccttcggtgcaattggtc-tgtctgtctgtcactccacctgatgtaatgtattttacag----------------------
|||||   | | ||||||||||| || || || |||||||| || || ||||| |||||||||||||| ||||||||   |      ||  |||  | | |    || |  ||    | | |  ||  | |    ||| | |||      | | |   | | ||                      
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattca-cacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057928|gb|BM736595.1|BM736595
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAACCAGCAACC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60399168|gb|DN231982.1|DN231982
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|148962276|gb|EE013101.2|EE013101
EST:     GACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: GACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|87152813|gb|DY397602.1|DY397602
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|6826953|gb|AW330596.1|AW330596
EST:     ATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGGCTG-C-CTAATGAG                         GAAGCTGTTGCCATGGTCA
genomic: ATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGT-TGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCA
EST: gi|211526714|gb|FL481404.1|FL481404
EST:     AATTCCTCATCCTTGCTAGCGATGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|19855109|gb|BQ060161.1|BQ060161
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|211336615|gb|FL398412.1|FL398412
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60341783|gb|DN208756.1|DN208756
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|5525216|gb|AI861214.1|AI861214
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCNCTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|78023072|gb|DV491459.1|DV491459
EST:     TTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: TTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60394820|gb|DN227689.1|DN227689
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|21329699|gb|BQ485080.1|BQ485080
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60347289|gb|DN214262.1|DN214262
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60344579|gb|DN211552.1|DN211552
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|60348720|gb|DN215693.1|DN215693
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|71419053|gb|DR804631.1|DR804631
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|6827326|gb|AW330969.1|AW330969
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
EST: gi|211247655|gb|FL406574.1|FL406574
EST:     AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAG                         GAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC
genomic: AATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacag ... tattttacagGAAGCTGTTGCCATGGTCAAGCCTATCCAGGACCCCCAGGAAGCAGCAAAC