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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgagagtttgagtgttcct...

Basic information

species Zea mays
transcript GRMZM2G165418_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 6
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagta-atttgatacattgaattttctcatttcaagg-ggatccattttgcaactt--ctccatgggttcatatgcatctctttgagagtttgagtgttcct
||| | |||| ||| |  |||| ||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||||| ||||  ||||||| ||||   |   | |||||||| ||    | | |||  | |||| |  ||||  ||  ||||||| |||||| || |||| |||     |||   ||||   
GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCACATGCTCATGATTACCATATTAACTCTATATCAACCAATAGgtaagtatgatcattgcattgaatattaatctattaagctgtatccctaatgcattttttctccatgagttcatctgtatctatttc----ttttcatgttgaa

upper sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgagagtttgagtgttcct-----
|| ||||| |  ||  | |     || ||| |||||||  | |||| ||| |||||||| ||||| ||||| ||||||||||||||||| ||    || |||||| || ||||   |||  |||| | |  | | || | || ||  |  |  |  | | || |  || | ||| |  ||     || |        
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAG-

upper sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 6
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgagagtttgagtgttcct-----
|| ||||| |  ||  | |      | ||| |||| ||  | |||| ||| |||||||| ||||| ||||| ||||||||||||||||| ||    || |||||| || | ||   |||  ||   |    | ||  | |   | |||     | |||| || |  || ||||| |  ||     || |        
GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAG-

upper sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgag---agtttgagtgttcct-
|| || || |  ||  | | |||||| |||||||||||| | |||| |||||||||||| ||||| ||||| ||||| || |||||||| ||||  || |||  |  ||||| | ||   ||  |        ||    | |||||| ||  ||  || |  |   |  ||  |||    | | | |||  ||   
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattc-acccattggaatt---caacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga

upper sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacat---tgaattttctcatttcaaggggatccattttgca-acttctccatgggttcatatgcatctctttgagagtttgagtgttcct
||  | || |  ||  | | ||  || |||||||||||  | || | ||||||||||||||| || ||||| ||||||||||||||||||||||  ||      |  |||   | |||| || ||| | | |  |  |  || ||   || | ||  |     | | | ||| | || |     |    ||  | |
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgt-ggttccacaacccatactttaattctcgcatataatgtag--ctgttctgtttacatatctgttcac-cttgttcatgtattgggtttatcttatgacctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352864|gb|CD437221.1|CD437221
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         TGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
EST: gi|211384024|gb|FL015619.1|FL015619
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         NGATGGNGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
EST: gi|24934206|gb|CA452424.1|CA452424
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         TGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
EST: gi|211386654|gb|FL015627.1|FL015627
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         TGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
EST: gi|211386649|gb|FL015622.1|FL015622
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         GGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
EST: gi|67025874|gb|CO454623.1|CO454623
EST:     GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAG                         TGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA
genomic: GTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatt ... taatcgacagTGATGGTGAGACATTCATATCAGCAGATGATCTCCGAATAAATTTATGGAA