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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAGgtactcaaaccactcttgacttttttttgtctttcggctttctcttgctatggcctttgttgataatatttagttgaggtacgagttttgtttgtcatgatcag

Basic information

species Zea mays
transcript GRMZM2G165351_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 9
GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAGgtactcaaaccactcttgacttt----tttttgtctttcggctttctcttgctatggcctttgttgataatattta---gttgaggtacgagttttgtttgt---------catgatcag
||||||||| ||||| |||| || ||||||||||| ||||||||||||||||||||| || | |  |||||||||||    ||| |   |   || | |      | || ||   | || ||  || ||    || |  || | |||| | |||||         ||||| |||
GGTATTGCACTGATAATTACTGTTATCCAAATTGTTAGAGTACCTAACCTCAAGgtaatctagctgctcttgacttttgactttctacatgatggatgttaagctccattgcaagttttcattttactttagcgtggttgttcaagttatctttgtaactgaggccatgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025992|gb|CO454741.1|CO454741
EST:     TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTTGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
genomic: TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
EST: gi|32843028|gb|CD982709.1|CD982709
EST:     GTACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTTGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
genomic: GTACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
EST: gi|74234147|gb|DT642061.1|DT642061
EST:     AAATTGTGAGAGTACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
genomic: AAATTGTGAGAGTACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
EST: gi|67024697|gb|CO453446.1|CO453446
EST:     TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTTGGCTGTGCCTTCCTGTATTATATCTTCTGGGTG
genomic: TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
EST: gi|32848049|gb|CD987730.1|CD987730
EST:     ACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTTGGCTGTGCCTTCCTGCATGATATCTTCTGGGTG
genomic: ACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG
EST: gi|67017568|gb|CO446317.1|CO446317
EST:     TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG                         GTGGGTTCGGTTCTTCTTGGCTGTGCCTTCCTGTATGA-ATCTTCTGGGTG
genomic: TTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAGgtactcaaac ... tcatgatcagGTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTG