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CATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaattcttctttggtcacatatcaatgtgataatacaattgattaattcacaatactgtctgtataacattgcctttctgaatgttattggtat...
species | Zea mays |
transcript | GRMZM2G164956_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32801606|gb|CD953842.1|CD953842
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: GATCCACGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32798761|gb|CD950997.1|CD950997
genomic: GATCC-CGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTEST: gi|32789660|gb|CD941896.1|CD941896
genomic: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGT
EST: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|18964493|gb|BM661037.1|BM661037
genomic: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCA-GCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCEST: gi|32928427|gb|CF033239.1|CF033239
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGC
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32846981|gb|CD986662.1|CD986662
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|19272557|gb|BM888813.1|BM888813
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32929175|gb|CF033987.1|CF033987
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32801655|gb|CD953891.1|CD953891
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|161407373|gb|DW042376.1|DW042376
genomic: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32801868|gb|CD954104.1|CD954104
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: CCGTGCCTTGCATGGAGATGTTTTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|87153206|gb|DY397995.1|DY397995
genomic: CCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAEST: gi|32795159|gb|CD947395.1|CD947395
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCGGGTTTTGGTTGCTACAEST: gi|32928455|gb|CF033267.1|CF033267
genomic: GATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
EST: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAA GTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
genomic: TTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaat ... gatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAAGCTCAGCGTGAAgtatgtgaattcttctttggtcacatatcaatgtgataatacaattgattaattcacaatactgtctgtataacattgcctttctgaatgttattggtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA