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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagattctgaccttaaacgtgtttgtttacagaattctgcaccaaactttgacttattcatactaaattaattaactaatctttgtagtcttaaga...

Basic information

species Zea mays
transcript GRMZM2G164797_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164797_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 5'ss of exon 7
GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagattctgaccttaaacgtgtttgtttacagaattctgcaccaaactttgacttatt-catactaaattaattaactaatctttgtagtcttaaga
||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||| || ||  |||||   | |||||| ||| |||| |    |||||      |   | | | || ||    | |      |  | ||  ||   | 
GCCCTTGACACTTTCAACACTGCAGTGGTTTCGCCCATATATTATACGATGTTTACATCCTTGACCATTTTGGCCAGTGTGATAATGTTCAAGgtaacaggttttgggcttaatt-tatttgttgacataattttaatacaaacaccatgtagctgccttcttaaaaggtgatggcgacactataaactattgt

upper sequence: GRMZM2G164797_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgta---acagattctgaccttaaacgtgtttgtttacagaattctgcaccaaactttgacttattcatactaaattaattaactaatctttgtagtcttaaga-
||||| |||||||| ||||| ||| ||||||| || |||||||||   ||||| ||||| ||||||||| |||| ||||  || |||||||||||     | ||  ||      || | |     ||  || | ||  |  | | | | |   || |||  | ||  |   | ||   ||  ||| |  | ||    
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctacc-attgtcaaagtttagagcaacaatatctgtttttctaagtaggtctgtgaa--gatgattg-atccgtacacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415280|gb|FL246624.1|FL246624
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|78120467|gb|DV538851.1|DV538851
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|67026855|gb|CO455604.1|CO455604
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|71301104|gb|DR786584.1|DR786584
EST:     TGTAATAATGTTCAAG                         GATGGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGTTTC
genomic: TGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
EST: gi|89760200|gb|DY688717.1|DY688717
EST:     ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG                         GATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... ttgaatacagGATTGGGATCGTCAAAATCCAACACAAATTGTAACGGAGATGTGCGGCTTC