Sequence
atgc intronic sequence ATGC exonic sequenceTTGCATTGTGCGGCATTGTAAAGTCTCAGGAATGGAGGCTTTCAGGTCTAATTGCTTGGGTATTAGGGGTTTACAGCATTCTTGGACATAAAGAATTCAGgtattcaccttttcctgtaagtgtatagtgcccttgtagtcaagtaacctcttctctctattcacatgatatgatacaaaaagattgaatactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 3
-TTGCATTGTGCGGCATTGTAAAGTCTCAGGAATGGAGGCTTTCAGGTCTAATTGCTTGGGTATTAGGGGTTTACAGCATTCTTGGACATAAAGAATTCAGgtattcaccttttcctgtaagtgtatagtgcccttgtagtcaagtaacctcttctctctattcacatgatatgatacaaaaagattgaatactgcag
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TTTCCATT-TCTGGAATTTTGAAGTCTCGAGAATGGAGGCTTGCAGGTCTTATTGTCTGGGTATTAGTGGTTTATAGCATACTTGGACATAAAGAATTCAGgtacttatctcttcgcacaagtttgtaatgttc----aatctcttatcactagactagtacacacatgccctgatataaatggatcggatacaacag
upper sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 4
TTGCATTGTGCGGCATTGTAAAGTCTCAGGAATGGAGGCTTTCAGGTCTAATTGCTTGGGTATTAGGGGTTTACAGCATTCTTGGACATAAAGAATTCAGgtattcaccttttcctgtaagtgtatagtgcccttgtagtcaagtaacctcttctctctatt-cacatgatatgatacaaaaagattgaatactgcag
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TTTCAATTTCTGGAATTATGAAGTCTCGAGAATGGAGGCTTGCAGGTCTTATTGTCTGGGTATTAGCAGTTTATAGCATACTTGGACATAAAGAATTCAGgtacttatctcttctcacaagtttgtaatgttc----aatc---tcttctcactacacaagtgcacatgccctgatataaatggatcgaatacaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71427411|gb|DR808461.1|DR808461EST: AGGGGTTTACAGCATTCTTGAACATAAAGAATTCAG GTTTGTTCTTCCAGTGCTCCCTTTAGCATTGATGTTCTCAGGTTACTGCTT
genomic: AGGGGTTTACAGCATTCTTGGACATAAAGAATTCAGgtattcacct ... aatactgcagGTTTGTTCTTCCAGTGCTACCTTTAGCATTGATGTTCTCAGGTTACTGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCATTGTGCGGCATTGTAAAGTCTCAGGAATGGAGGCTTTCAGGTCTAATTGCTTGGGTATTAGGGGTTTACAGCATTCTTGGACATAAAGAATTCAGgtattcaccttttcctgtaagtgtatagtgcccttgtagtcaagtaacctcttctctctattcacatgatatgatacaaaaagattgaatactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA