Sequence
atgc intronic sequence ATGC exonic sequenceAACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatatacaagtgtacactgctgccaatgcaacaagagagctcacaccttggcgttcttcttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g25734.2 (Oryza sativa), 5'ss of exon 7
AACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaa-tatatacaagtg---tacactgctgccaatgcaa-caagagagctcacaccttggcgttcttcttttccag--------
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AACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTACGAGgtaaaataagtgcatgtataatatgcctctgtcagagaaaataagagaatttatccctttctttttcctttttctggttcaccag
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 7
AACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatatacaagtgtacactgctgccaat-gcaacaagagagctcacaccttggcgttcttct-----tttccag----------------------
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AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgtggctaaataacttgtgctcggttacacctagtatttccaagttttaatagccaacaaggaatgtcaaagtggttgaaagacttagatgaa
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 7
AACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatatacaagtgtacactgctgccaat-gcaacaagagagctcacaccttggcgttcttcttttccag-----------------------------
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AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGgtaataatgt--ggttaaacaacttggccagttacgcctagtatttccaagttttaatagccaagttttcacgtgtgaaagtggttgaaacacttggatatt
upper sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT5G48300.1 (Arabidopsis thaliana), 5'ss of exon 6
AACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatataca----agtgtacactgctgccaatgcaacaagagagctcacaccttggcgttcttcttttccag------------
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AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatctgtcttgcaatcaatcttcttgctaa-gtaatgtcaaccttttgatgatggtggtcttctttgatgattgtttgcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32941128|gb|CF045947.1|CF045947EST: AAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAG ACTGAAGCTGACAAGAAACTCCTTGCCGAAAATGGTGGCATTCCCATTGGT
genomic: AAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatat ... tcttttccagACTGAAGCTGACAAGAAACTCCTTGCCGAAAATGGTGGCATTCCCATTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTGCAAGATACACCATTCTGTAGTTGGACTCCGTTCTTGCATATCTGAAGGTGCTATCATAGAGGACACTTTACTAATGGGTGCGGACTACTATGAGgtaaatatatacaagtgtacactgctgccaatgcaacaagagagctcacaccttggcgttcttcttttccag
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