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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtcagtcttactaaagatggaccgtgcatccctttctcgtattagcagacctataagggcttgttcggttaattccgttacacatggattgga...

Basic information

species Zea mays
transcript GRMZM2G163159_T04
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108412|gb|DV526830.1|DV526830
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagG-T------CGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|84970115|gb|DV171511.2|DV171511
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCCCTATCAGTAATCGAGGGTGAAG                   
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATC------G-AGgtacgaagtc ... aagg
EST: gi|110214716|gb|EC896613.1|EC896613
EST:     GAGGCGCCTTTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagG-T------CGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|78122235|gb|DV540619.1|DV540619
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTG
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... aagggtgaagGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTG