Sequence
atgc intronic sequence ATGC exonic sequenceGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAGgtacatctatggtggccatgttgctgactacatgaaggtgagttgtgcttgctgctgaacacattatttcatttcctttgttccctcgtgattactgtga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G163081_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 7
GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAGgtacatctatggtggccatgttgctgactacatgaaggtgagttgtgcttgctgctgaacacattatttcatttcctttg---ttccctcgtgat-tactgtga----------------------------------------------------------------------------------------------------------------------------------------
|| |||||||||||||| |||||||||||||| |||||| | ||| |||||| ||||||| ||||||||| ||||| || || ||||||||||||| |||||| || || | | ||| || | |||| || | ||| | || | ||
-----------------------------------TGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctgg---cactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcag
upper sequence: GRMZM2G163081_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 7
GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAGgtacatctatggtggccatgttgctgactacatgaaggtgagttgtgcttgctgctgaacacattatttcatttcctttgttccctcgtgattactgtga-------------------------------------------------------------------------------------------------------------------------------
|| |||||||||||||| |||||||||||||| |||||| | ||| |||||| ||||||| ||||||||| ||||| || || ||||||||||||| |||||| || || | | ||| || | | | ||| | || | |||
-----------------------------------TGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctgg---cactattagatcaattgtt-cgtgctgtgggttgtattaggaattatgtagctgccttgatgtttataacgttgactaaagcattatataaagtttggattatttgttactgtttagctcagtctgctttattttgattgtcatcaggataaattttcttcttatgtacttgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4314668|gb|AI438574.2|AI438574EST: GCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAG GTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
genomic: GCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAGgtacatctat ... cgtgtttcagGTACAACCCCAAGAAGCTGACATATGAGCAGAGGAAGGCCAGCCTCATTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAGGACGACAAGCAGTTGGATGCTGATACCCACCGCAGgtacatctatggtggccatgttgctgactacatgaaggtgagttgtgcttgctgctgaacacattatttcatttcctttgttccctcgtgattactgtga
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttccctc