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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgcaacggttgagattatcttgttctgttgataaaatggtagggtggatgg...

Basic information

species Zea mays
transcript GRMZM2G161418_T06
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgca-acggttgagattatcttgttctgttgataaaatggtagggtggatgg-
|||||||| ||||| ||||||||||| |||||||| |||||||| ||  | ||||| || ||||  || |||||||||| | ||   |||| |||  || |    |   | |   |  ||      |      |   |  || |||||        | |||  ||   |  ||   
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtcttta-catatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaa-tacatcaa

upper sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccat--agtgcatgcatgactc-ttgcaacggttgagattatcttgttctgttgataaaatggtagggtggatgg
|||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||||||| ||||   |||  |||  || |    |  ||| ||| ||    |  || ||||| ||  |  ||  |  |  |  | ||||||   |    |  |   
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttg-catatttaactttttcagtacatacagatgtaatttcaacgattttgtatag-tcatcataatcataaaagcattacatttaga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91052132|gb|EB162550.1|EB162550
EST:     TTCGAAAACATATATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|18163021|gb|BM332860.1|BM332860
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|8930534|gb|BE225298.1|BE225298
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTTTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|32914682|gb|CF019494.1|CF019494
EST:     TTTGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|149110160|gb|EE293976.2|EE293976
EST:     AGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: AGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|211401652|gb|FL441809.1|FL441809
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTACAAGCTTCCTCGAGG
EST: gi|113613005|gb|DW775593.1|DW775593
EST:     TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG                         ATGACATGTGATGTGAAGGTCACGTTCTTCAAATTA
genomic: TTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagtt ... ctctttgcagATGACATGTGATGTGAAGGTCACGTTCTTCAAATTA