1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAACAGTGTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtatttctttttccctattagaactccataatatagtacattgcattctgatataaatacaatgctatttttcctttgggaaatttggatccatac...
species | Zea mays |
transcript | GRMZM2G161337_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|71429501|gb|DR810551.1|DR810551
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTGGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|33099478|gb|CF059438.1|CF059438
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|71761802|gb|DR959739.1|DR959739
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|71762476|gb|DR960413.1|DR960413
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|67014966|gb|CO443715.1|CO443715
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|71314990|gb|DR794114.1|DR794114
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|31364516|gb|CD448871.1|CD448871
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|116816802|gb|EC859574.1|EC859574
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGAGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|33093179|gb|CF053173.1|CF053173
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|71448131|gb|DR829181.1|DR829181
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|60357763|gb|DN224736.1|DN224736
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|32836831|gb|CD976509.1|CD976509
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: TG-CGANGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAACCCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|7238168|gb|AW573390.1|AW573390
genomic: TGCCGA-GCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|32866600|gb|CF006282.1|CF006282
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|13178556|gb|BG349814.1|BG349814
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: AAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|60398523|gb|DN231339.1|DN231339
genomic: AAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|211345792|gb|FL266265.1|FL266265
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: AGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|60344440|gb|DN211413.1|DN211413
genomic: AGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|211345789|gb|FL266262.1|FL266262
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|211345791|gb|FL266264.1|FL266264
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|32836931|gb|CD976609.1|CD976609
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|67024314|gb|CO453063.1|CO453063
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|211282582|gb|FL175928.1|FL175928
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGAEST: gi|149026791|gb|EE046153.2|EE046153
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
EST: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAG GTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
genomic: GTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtattt ... ggcttgatagGTATCCAAACCAGGATCAGTGAAGGTGGAGAAGTTGATGAACATTGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAACAGTGTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtatttctttttccctattagaactccataatatagtacattgcattctgatataaatacaatgctatttttcctttgggaaatttggatccatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA