Sequence
atgc intronic sequence ATGC exonic sequenceAGCCAAAGATAGATTCCAAGAAGAATGATGATTTAGCTAGTGAAATAGAAGACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttgctctcttctttaacctgttaagccatcacaatctcaatcactttctctcatggtctcacagttttctcgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 7
AGCCAAAGATAGATTCCAAGAAGAATGATGATTTAGCTAGTGAAATAGAAGACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttgctctcttctttaacctgttaagccatcacaat-ctcaatcactttctctca-tggtctcacagttttctcgttgcag--------------------
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GGCCAAAGACAGATTCCAAGAAGAATGATGATCTAGTTGGTGAAGAAGAGGACAAGGAGCTATATGTTGAACGCATACGACTTGAAACAATGAATTTGAGgtttgtgctattcttgaccttttaggccatcacagttcctgaaaacttgctattgcttgtcttctccactcatatttgatatttccttccttgttctgtag
upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 7
AGCCAAAGATAGATTCCAAGAAGAATGATGATTTAGCTAGTGAAATAGAAGACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttg----------ctctcttctttaacctg--ttaagccatcacaatctcaatcactttctctcatggtctcacagttttctcgttgcag-----------
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ACAATAAGAAAGATCCAAAGAAGGACAATGAAATTAACTCTGAAGCAGATGGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAATATGCAACTAAGgtcataaattgcttctctctctctctctctgcattgttctttctggatgaggaccagtgcct-ttataataacattatta-cttgttatagatgcttatctg
upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 7
AGCCA-AAGATAGATTCCAAGAAGAATGATGATTTAGCTAGTGAAATAGAAGACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttgctctcttctttaacctgt-taagccatcacaatctcaatcactttctctcatggtctcacagttttctcgttgcag--------------------
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-GCAATAAGAAAGATCCAAAGAAGGACAATGAAATTAACTCTGAAGCAGATGGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAGTATGCAACTAAGgtcgtaaagtgcttctctctctctgcattgttcttgctgctactactatatttcttgttatcttatcttctttctggatgaggatcagtgcctttatataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|118406769|gb|EH038217.1|EH038217EST: GACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAG CTTTGGGAATTTATTTGGCAAGGTCACAATTCAAGAGCCTACATTTGAAGA
genomic: GACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttgctctct ... ctcgttgcagCTTTGGGAATTTATTTGGCAAGGTCACAATTCAAGAGCCTACATTTGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCCAAAGATAGATTCCAAGAAGAATGATGATTTAGCTAGTGAAATAGAAGACAAGGAGCTTTATGTTGAACGCATACGTCTTGAAACAATGGATTTAAGgttgctctcttctttaacctgttaagccatcacaatctcaatcactttctctcatggtctcacagttttctcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT