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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTAAAGTTGCTGGAAATTTTCACTTCGCCCCAGGCAAAGGATTTTATGAATCAAACATAGATGTGCCTGAGCTGTCATTACTTGAGGGTGGTTTCAACgtaagtagcccatgttaaattttttccctagattattttgactgattacttcaatgtttctaatatgtttacctgtaaatttaccag

Basic information

species Zea mays
transcript GRMZM2G161019_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161019_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g41120.1 (Oryza sativa), 5'ss of exon 7
CAGTAAAGTTGCTGGAAATTTTCACTTCGCCCCAGGCAAAGGATTTTATGAATCAAACATAGATGTGCCTGAGCTGTCATTACTTGAGGGTGGTTTCAACgtaagtagcccatgttaaattttttccctagattattttgactgattacttcaatgtttctaatatgtttacctgtaaatttaccag
||| |||||||| || || || ||||| || |||||||||||||||||||| ||||| ||| ||||||||||||||||   |||||||  ||||||||||||||||||  |    ||||| ||     |   | |   ||  |  ||| |||| ||||||| ||||||||   | ||| ||||||||
CAGCAAAGTTGCAGGGAACTTACACTTTGCTCCAGGCAAAGGATTTTATGAGTCAAATATAAATGTGCCTGAGCTGTCGGCACTTGAGCATGGTTTCAACgtaagtaggtc-caataaatgttccttttccttaaaagtgttt--tta-ttcagtgtttctgatatgtttgtgtataattttaccag