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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgttagaaacaaacgcaaacaacgaaatatccggcctcggttacacgaagcattttgttggcgaagttagtcgatctgtctctgacgagcattcttcgacatcttacggtttacag

Basic information

species Zea mays
transcript GRMZM2G160569_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160569_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g44070.2 (Oryza sativa), 5'ss of exon 8
AAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgttagaaacaaacgcaaacaacgaaatatccggcctcggttacacgaagcattttgttggcgaagtt---agtcgatctgtctctgacgagcattct--tcgacatcttacggtttacag------------------
|||||| || ||||| || |||||||| ||||| || |||||||| || ||||||||||| || ||||||||     | || || ||||| |||||||||||||||    |        | || |  ||  ||| || |    ||| ||  |   |     |   || |  |  |   ||    |   | |   || || | |||  ||     | | |  | |||                    
AAGGCAGAACGGTCTTTTTATCAACTCCTGTTTCGCACATTGCCAAAGTGAGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaactctgcggtgatgccatgaa--aaacattc----tcgcttcgaaagatttcctgactgtctgaactctgagctcctacatgtaaaaccagtagtctcatcagacccatcccatgtactttttttcttggatatgcag

upper sequence: GRMZM2G160569_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g01110.t01 (Vitis vinifera), 5'ss of exon 11
AAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgttagaaacaaacgcaaacaacgaaatatccggcctcggttacacgaagcattttgttggcgaagttagtcgatctgtctctgacgagcattcttcgacatcttacggtttacag
 |    |||||| || ||||| |||||||||||||||||||| ||||  ||||||||||| |||||||  ||  | || || || ||| | || ||||||| |||         | ||| |  | |  |   | | |  | | |    ||||  ||| |         || | | | | |   ||||   ||| | |||      ||||  |           
CAAAAGAAATGGGCTATTCATAAACTCATGTTTTGCTCATTGTCAGACAGAGAGACAGGACACTTGGTTTGCTCATAATTCTCCTCGTATCGGAAACAAGgcacg---------accaaccttacattatttagt-ttagtcatatcatacatcaagaaaacataattcggaatcatttg--ttgtcatagac-accatgaccaaacattgtg----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29544313|gb|CB604693.1|CB604693
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|31998134|gb|CD661943.1|CD661943
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|148953387|gb|EE152881.2|EE152881
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTTTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|91056470|gb|EB166888.1|EB166888
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTTTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|9254762|gb|BE345230.1|BE345230
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|60400656|gb|DN233463.1|DN233463
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|4887514|gb|AI677613.1|AI677613
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|5058593|gb|AI737069.1|AI737069
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|101383816|gb|EB813963.1|EB813963
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTTTTTGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|91051274|gb|EB161692.1|EB161692
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATGGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|31356908|gb|CD441265.1|CD441265
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAATGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|86471748|gb|DY238118.1|DY238118
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|93016716|gb|EB642236.1|EB642236
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|149028341|gb|EE154630.2|EE154630
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|24765573|gb|CA400732.1|CA400732
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCAGGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAATGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|78025651|gb|DV494038.1|DV494038
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTCGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|149009226|gb|EE153857.2|EE153857
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTTTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|149101141|gb|EE187249.2|EE187249
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|76932739|gb|DV173141.1|DV173141
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|50332177|gb|CO527303.1|CO527303
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
EST: gi|60401537|gb|DN234344.1|DN234344
EST:     AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAG                         AAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG
genomic: AGAGACAGGATACTTGGTACGCGAACAACTCGCCACGTCTTGGTAACAAGgtacgcgtgt ... cggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAG