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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACGgtaagttggcacagctgattttaagttttacagcatcacaataaactagcaaagcctgcccttatgttgctgttcacatgggtattttttaaattctaatgttgtaagagaaattttagggtttagctctgtgttgacgttgtatttgtttgtgacaccttttcag

Basic information

species Zea mays
transcript GRMZM2G159295_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159295_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 5'ss of exon 7
GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACGgtaagttggcacagctgattttaagttttacagcatcacaataaactagcaaagcctgcccttatgttgctgttcacatgggtat-tttttaaattctaatgttgtaagagaaattttagggtttagctctgtgttgacgttgtatttgtttgtgacaccttttcag
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GCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGgtaagttgaggcagctaagtcgaa--tttacaatatcaaaatgggctagcaaaacatggcctaaggcttttgtttacaacacaacatcgttgaaaattaatagt---------actctaggctttcaccctttgctgac--tgtatttgtctgctatactgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748706|gb|DY532847.1|DY532847
EST:     GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACG                         TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG
genomic: GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACGgtaagttggc ... accttttcagTTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG
EST: gi|76291165|gb|DV030733.1|DV030733
EST:     GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACG                         TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG
genomic: GCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACGgtaagttggc ... accttttcagTTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG