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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctagattttccatcagactatcggttgttgttgcaagtgcttgttcctttctcatgtttttgtttcaatgtttgtttattacttttacacag

Basic information

species Zea mays
transcript GRMZM2G158162_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 7
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctagattttcca--------tcagactatcggttgttgttgcaagtgcttgttcctttctcatgtttttgtt------tcaatgtttgtttattacttttacacag
|||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||         ||  ||||     | ||  ||||| |||||||| |  | || | |||   ||      ||||||||| | | |||||| |  ||||
TGACTTTTAGTCGGATAGAACCTGGAGGGAAACTTGTTATGGGCTTCCGGAAGGCCACAAACACTGTCAGTTTGCCAgtaagttagattttcctaacattcttcctactaatttattttcctgcaaatgcttgtttcactttcctttttcccttcctttatcaatgtttttatgttacttctgtacag

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 9
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gctagattttccatcagactat---cggttgttgttgcaagtgcttgttcctttctcat-gtttttgtttcaatgtttgtt--tattacttttacacag------------------------------------
| || |||||||| |||||||| ||||| |||||||||||||| ||  | |||||  | ||| ||     |   |  ||   |  | | |||||||   |||||    || |  |  |   | |  |   || ||| | ||  || || ||   ||  || ||  ||||| | |||                                         
TAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGgttgtgacacaatttccattttactatgtgtggcttctcctttgaataatacatcttttattattattattattattattattattattattattattatttctgttggtgaatatgataaacggctattgtttaaacag

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 3
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gctagattttccatcagactat---cggttgttgttgcaagtgcttgttcctttctcatgtttttgtttcaatgtttgtttattacttttacacag-----------
| || |||||||| |||||||||||||| ||||| |||||||| ||  | || ||  ||||| ||     |   |  ||   | || | |||||||   || ||    ||    |  |   | |  |   || ||  |  | || || ||||  |   ||  ||| |    |    |            
TAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGgttgtgatacaatttccattttaccatgtgtggcctcttctttgaataatacatctttattattattattatttctgttggtgaatatgataaatggctattgtttaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5268958|gb|AI770922.1|AI770922
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGGCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|67034443|gb|CO462993.1|CO462993
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|67040653|gb|CO466908.1|CO466908
EST:     -AAACTTGTTATGGGCTTTCG-AANGGC-ACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGGTCCCTTCTCAGTGAGAC
genomic: GAAACTTGTTATGGGCTTTCGGAA-GGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGAC
EST: gi|13150757|gb|BG321079.1|BG321079
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC
EST: gi|6564045|gb|AW231667.1|AW231667
EST:     GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCA                         GACTCACAGATTTCAGCTATTGCAAATGGTTCCCTTCTCAGTGAGACACTC
genomic: GGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaagctaga ... ttttacacagGACTCACAGATTTCAGCTATTGCGAATGGTTCCCTTCTCAGTGAGACACTC