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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcatttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacaatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag

Basic information

species Zea mays
transcript GRMZM2G157836_T05
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157836_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 6
ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcatttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacaatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag
||||||||||||||| ||||| || ||||| ||||||||| | || |||||||| || || ||||| |||||||| ||||||| ||| |  ||   |  |||||  |||||  | ||| || | |||   ||| | |   | |||   ||  |    |  || |  |     | |    |   |                                                                     
ATATGATATAGTTGTAGATGCCACGGACAATCTTCCTACTCGATACATGATCAGTGACTGTTGTGTGTTGCTGAATAAGgtaaattcttgctt-ccgaggtaaataatgcagtcaatacttcaaatg---ttcat-caggggaataccaattttcatcttagcatgtaatttagtgagtttcag---------------------------------------------------------------------

upper sequence: GRMZM2G157836_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g56080.1 (Oryza sativa), 5'ss of exon 5
ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgta---acttcatttttgttgtt-gtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacaatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag
|||||| ||||| ||||| |||||  ||||||| |||| | |||| |||||||| ||||| |||||  || |||||||||||   | ||||  ||||||  |  | | |  ||  ||  ||| |  ||||        ||    | |  ||    ||  |  |  | | | |   ||   |                                                                            
ATATGACATAGTAGTTGACGCAACAAACAACCTGCCTAGTCGGTACATGATCAGTGATTGTTGTGTCCTGATGAACAAGgtataaagttcagctttgtttctcatcatctctgtttgtaatagtacatataag----ctgtgacggagcgtggggctcctcaccgggagactgcgcaggcccc--------------------------------------------------------------------------