1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GATCTCCTCAGAATAAGCTTGGTAGAATTGCTTTGGTTGACACAATTGCTAAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaattatgtcttgttcttcagtaacattgtatctgctatgtgccatctaatacttagatataaacgctatatattgggacacaaattcttctcactatgatggtgttaattcatattttgctaaaatgaaacccacttgttgtgctgcaatttcag
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGG ACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGAEST: gi|30306992|gb|CD001665.1|CD001665
genomic: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaatta ... gcaatttcagACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGA
EST: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGG ACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGAEST: gi|22472855|gb|BU037335.1|BU037335
genomic: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaatta ... gcaatttcagACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGA
EST: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGG ACTTCAGGGTAAGTCTCAAATGG-GCAAGATGAACTGGCAAGGCTGGGAGAEST: gi|211286767|gb|FK982433.1|FK982433
genomic: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaatta ... gcaatttcagACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGA
EST: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGG ACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGA
genomic: AAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaatta ... gcaatttcagACTTCAGGGTAAGTCTCAAATGGTGCAAGATGAACTGGCAAGGCTGGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTCCTCAGAATAAGCTTGGTAGAATTGCTTTGGTTGACACAATTGCTAAGCAAATCCGTAAAAGAATGAAAGTGCGGGTTCCTAACCTATTGAGTGGgtaagaattatgtcttgttcttcagtaacattgtatctgctatgtgccatctaatacttagatataaacgctatatattgggacacaaattcttctcactatgatggtgttaattcatattttgctaaaatgaaacccacttgttgtgctgcaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA