1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactttcatcatgttaatttcatcatttcttctcctctgactgtaatgaagcttattatcccaatgtgatgtaaatgcctaatcacttttgtatg...
species | Zea mays |
transcript | GRMZM2G156800_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|22542085|gb|BU092523.1|BU092523
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|22473422|gb|BU037902.1|BU037902
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|50338068|gb|CO533194.1|CO533194
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|60345120|gb|DN212093.1|DN212093
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|87157200|gb|DY401989.1|DY401989
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|26558715|gb|CA830950.1|CA830950
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|6031429|gb|AW076331.1|AW076331
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|211321744|gb|FL182473.1|FL182473
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGATEST: gi|211321747|gb|FL182476.1|FL182476
genomic: CAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
EST: AGCTCCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG GTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
genomic: AGCT-CCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactt ... tatgttacagGTTGTTCGGGCTACACTCGATAAAAGTGCAGGTTATGATCTTGCTGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAGgtatgaactttcatcatgttaatttcatcatttcttctcctctgactgtaatgaagcttattatcccaatgtgatgtaaatgcctaatcacttttgtatg
- - - - - CAGCTC
- - - - - - - - - - - - - TTGAAG