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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTGGTCCATATATTCAAGAAATAGAGGAACTGTGTAGGGATTATCCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttgtttttgcttgttcatattttgctggaatgtattcatatgaagcttatgtgttgcattgacatacag

Basic information

species Zea mays
transcript GRMZM2G155962_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155962_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g32150.1 (Oryza sativa), 5'ss of exon 7
GGAGTTGGTCCATATATTCAAGAAATAGAGGAACTGTGTAGGGATTATCCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttgtt--tttgcttgttc-atattttg----ctggaatg--tattcatatgaagcttatgtgt------------tgcattgacatacag
||| |  || |||||||||| || |||||||| || || |  ||||||||   |||||| |||||| | || ||||||||||||||||||||||||| |||| |||| ||  ||||||| | |   | | |      || |||   ||  ||  ||   ||| | |||            | ||||||||| |||
GGAATCAGTACATATATTCAGGAGATAGAGGAGCTCTGCACAGATTATCCAAAAACTACTGTTATTTTCGATCATATGGCTTTCTGCAAGCCACCAATgtaaactttttttatttgcttctcctgaactgtagtatttgtaatccttagccaagtgcttcttgtctgtgttaatgccatttccattgacatccag

upper sequence: GRMZM2G155962_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 7
GGAGTTGGTCCATATATTCAAGAAATAGAGGAACTGTGTAGGGATTATCCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttgtt----------tttgct----------tgttcatattttgctggaatgtattcatatgaagcttatgtgttgcatt--gacatacag
||  |   ||   |||||   ||||| ||| |||| || |  || |  ||| ||||    ||  | ||||||||| ||||||||||||| |||||||||| ||||               |||| |          | |  |||| ||||  |       |||||  |||||  | ||   ||||  |   | |||
GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAACgtgagctccaccatgcttggactttgttacagtgagtctttcaatatcttgcgaggtaaagatcataaaaagctgctctgacacatttcgttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284051|gb|EB676315.1|EB676315
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|60397566|gb|DN230382.1|DN230382
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|76909087|gb|DV163216.1|DV163216
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTTTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|101390398|gb|EB817133.1|EB817133
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|88748896|gb|DY533037.1|DY533037
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTTTTCATTTTTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|78090807|gb|DV519181.1|DV519181
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|26558292|gb|CA830527.1|CA830527
EST:     CCTGCAACTACCGNTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAG
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAG
EST: gi|76909089|gb|DV163217.1|DV163217
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
EST: gi|60357568|gb|DN224541.1|DN224541
EST:     CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAAC                         GAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT
genomic: CCTGCAACTACCGTTATTCTTGACCATATGGCTTTCTGCAAGCCACCAACgtaagctttg ... tgacatacagGAACGATGAAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATT