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GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttgcttctgtatatttaagagaaattaatttagagtgtaatgttatggcataatccattacactgaatggtttgagctagcatcgattccagattatggatctctgtagtaatgccatatttcttttctaacattatgctgaaaaccag
species | Zea mays |
transcript | GRMZM2G155729_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG GTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTGEST: gi|74243750|gb|DT651664.1|DT651664
genomic: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttg ... tgaaaaccagGTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
EST: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG GTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTGEST: gi|211407698|gb|FL252163.1|FL252163
genomic: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttg ... tgaaaaccagGTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
EST: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG GTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTGEST: gi|211407699|gb|FL252164.1|FL252164
genomic: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttg ... tgaaaaccagGTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
EST: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG GTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTGEST: gi|148942820|gb|EC887853.2|EC887853
genomic: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttg ... tgaaaaccagGTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
EST: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG GTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
genomic: TTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttg ... tgaaaaccagGTAGCAAAGGCTCCCGATGGCAATGGCGGAGTATATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAGgtacctcttgcttctgtatatttaagagaaattaatttagagtgtaatgttatggcataatccattacactgaatggtttgagctagcatcgattccagattatggatctctgtagtaatgccatatttcttttctaacattatgctgaaaaccag
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA