Sequence
atgc intronic sequence ATGC exonic sequenceCTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctcgattcatctttgcatgctttaattgttttataatagttgcacaatttcatctcacttattcttgccacttacatgaatgtgaaaaatcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154716_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g50620.2 (Oryza sativa), 5'ss of exon 4
----------------------------------------CTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTGgta-tattctcgattcatctttgcatgctttaattgtt-ttataatagttgcacaatttcatctcacttattcttgccacttacatgaatgtgaaaaatcaa---
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GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttattcatgcttgtgtgttttaaatgtagttgtaggttacgtagagcttgactac---tattcttatca--tacatggccttaatagaccaacga
upper sequence: GRMZM2G154716_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g21914.1 (Oryza sativa), 5'ss of exon 4
----------------------------------------CTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTGgta--tattctcgattcatctttgcatgctttaattgttttataatagttgcacaatttcatctcacttattcttgccacttacatgaatgtgaaaaatcaa--
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GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttatttcatgattgtgtgctttaaatgtagt-tggaggttacgtagagcttgactact-attcttacca--tacatggccttgaaaaaaccaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211094191|gb|FL353577.1|FL353577EST: CTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTG GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: CTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctcgattcatctttgcatgctttaattgttttataatagttgcacaatttcatctcacttattcttgccacttacatgaatgtgaaaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatca