1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAACACCAAGGCTTGGTGAGGACAAGGTGAAACAATGTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAGgtacatcccgttctctcgctctatgtgttatttatttgtgagacaaaaatccacatttttcaaatcgcctactgaaatctgaagtcattagtataaacaaaatcagcactggctgcaacacatttgtgaaataccaagccatcaacaattattatttcctttttttgttgttgctgcag
species | Zea mays |
transcript | GRMZM2G153945_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAG CTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATTTGAGTTCAGACCAEST: gi|148929739|gb|EC876646.2|EC876646
genomic: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAGgtacatcccg ... gttgctgcagCTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATCTGAGTTCAGACCA
EST: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAG CTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATTTGAGTTCAGACCAEST: gi|71447869|gb|DR828919.1|DR828919
genomic: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAGgtacatcccg ... gttgctgcagCTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATCTGAGTTCAGACCA
EST: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAG CTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATCTGAGTTCAGACCA
genomic: GTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAGgtacatcccg ... gttgctgcagCTAGCGGCAGTGGCGGCTCTCTGTGTCCAATACGAATCTGAGTTCAGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACACCAAGGCTTGGTGAGGACAAGGTGAAACAATGTGTTGATCCAAGATTGAATGGAGAGTACCCTCCAAAGGGAGTAGCAAAGgtacatcccgttctctcgctctatgtgttatttatttgtgagacaaaaatccacatttttcaaatcgcctactgaaatctgaagtcattagtataaacaaaatcagcactggctgcaacacatttgtgaaataccaagccatcaacaattattatttcctttttttgttgttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG