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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactttattgctgctacaagatgcttgtttcttaagcacaattggatgaagcataatttactgcattttaattgacaaaaatgaataatgagctggaagtataacagttacatcttttctgcacttctgttgtggacacaaaaactgttagttaatagcatgaatccgtgttatggaatgtag

Basic information

species Zea mays
transcript GRMZM2G153704_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 3
ATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactttattgctgctacaag---atgcttgtttcttaagcacaattggatgaagcata-atttactgca-ttttaattgacaaaaatgaataatgagctggaagtataacagttacatctt-ttctgcacttctgttgtggacacaaaaactgttagttaatagcatgaatccgtgttatggaatgtag
|||||||||||||||||||||||| |||||| || |||  ||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||| | | |||||| | | |     |  |  || | ||       |   |  |  || | |||   || |   | |||| | |   ||||||||  |       ||| | | |  | ||||  || || | || |||| || |                                               
ATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAAGTGTTCTGCCATATGTGGGCGTTGCTTGTTTGGGGGCTATTTTATTTGGTTATCATCTTGGgtatgtattgtgttgctgtttccaatttgtcataattgcatagattttctgtcaccacccacacattccttgtaacctgaatttaaattgatgaataacaatacctg-gtaaatctga-atatctcattttgaatttgtgttctgcag----------------------------------------------

upper sequence: GRMZM2G153704_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 3
ATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatg--tactttattgctgctacaagatgcttgtttcttaagcacaattggatgaagcataatttactgcattttaattgacaaaaatgaataatgagctggaagtataacagttacatcttttctgcacttctgttgtggacacaaaaactgttagttaatagcatgaatccgtgttatggaatgtag
|| ||    |          || |  ||||| || |||   ||| |||||| |||||| ||||||||| |||| || |||||||||||||| ||||| |||||||  |  |||||    |  | |  |||||| ||   |  |   ||||     || | | | |||  | |||| ||||  |    |  | | ||   ||                                                                                         
ATGTTGATGTCACTGCTCCCCAGGGCAAATCTTCTGGAACAGTTTTGCCATTTGTTGGTGTTGCTTGTCTGGGAGCAATTCTGTTTGGTTATCATCTAGGgtatgactgatttatcttagaaatagcatgctttttctatctgttaaattctg-aaatcttcaattaaagaatttgaatttcctttcaccatttatacact-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971787|gb|EE022525.2|EE022525
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|148977355|gb|EE026050.2|EE026050
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211244572|gb|FL131421.1|FL131421
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCCAARGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|148996907|gb|EE035711.2|EE035711
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211153701|gb|FL418638.1|FL418638
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTTGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|78078828|gb|DV507240.1|DV507240
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211441205|gb|FL381373.1|FL381373
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCAC
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCAC
EST: gi|211416246|gb|FL417246.1|FL417246
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211465272|gb|FL339432.1|FL339432
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211210064|gb|FL412311.1|FL412311
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|149083192|gb|EE172463.2|EE172463
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|148981335|gb|EE027589.2|EE027589
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211244570|gb|FL131419.1|FL131419
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACT
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACT
EST: gi|211349168|gb|FL426325.1|FL426325
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|211327531|gb|FL370114.1|FL370114
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGTGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|149082633|gb|EE171834.2|EE171834
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGG                         TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTACCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGA