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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACAAAGGTTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttgatgttctttttctttttcccaaaataactgctgcaagatttgcatttttcattttatcgttgttgcccatggcag

Basic information

species Zea mays
transcript GRMZM2G152757_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152757_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g08280.1 (Oryza sativa), 5'ss of exon 7
GCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACAAAGGTTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttgatgttctttttctttttcccaaaataactgctgcaagatttgcatttttcattttatcgttgttgcccatggcag------------------------------------------------------------------------------
|| || ||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| || ||||| ||||||||||||      | | |  ||||     ||   || |||    |    |   |   |     |||   | |    |    |||   ||                                                                              
GCCCTAGCCCGAGGTGACGGTGCCATTTACTTGCGTTTTCCACACAAAGGTTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggttctctttttgaacattgaaaacatagaacccaacaacctgaaaaaaaacatagaacccaactgaaacattttagattgatattctgcttgtgctaaaacgtagaaaccaactgaaacattttagattgatattctgcttgtgctgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086723|gb|DV515116.1|DV515116
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32842118|gb|CD981799.1|CD981799
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32842191|gb|CD981872.1|CD981872
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTACCAGATGCTGCGGGAACCGCCTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32842187|gb|CD981868.1|CD981868
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAACCGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32842188|gb|CD981869.1|CD981869
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|211300452|gb|FL250326.1|FL250326
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGCTCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTGACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32839910|gb|CD979591.1|CD979591
EST:     TTATAGAGAGAAAATATGGGACCCTGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|211300451|gb|FL250325.1|FL250325
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGCTCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTGACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32841437|gb|CD981118.1|CD981118
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|4572956|gb|AI586605.1|AI586605
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|211300453|gb|FL250327.1|FL250327
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGCTCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTGACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32842117|gb|CD981798.1|CD981798
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|6760483|gb|AW324642.1|AW324642
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32850770|gb|CD990451.1|CD990451
EST:     TATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGC
genomic: TATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTG-TCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGC
EST: gi|32841861|gb|CD981542.1|CD981542
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|76016036|gb|DT943206.1|DT943206
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32839911|gb|CD979592.1|CD979592
EST:     TTATAGAGAGAAAATATGGGACCCTGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACTTGGATTTCTCCA
EST: gi|32850780|gb|CD990461.1|CD990461
EST:     TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAG                         AAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACT
genomic: TTATAGAGAGAAAATATGGGACCATGCAGCAGGATCAATTGTCGTGACAGgttaatttga ... cccatggcagAAGCTGGAGGCATAGTAACAGATGCTGCGGGAAACGACT