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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAgtactcagattcatcagtttcatatctaaacagctatgactctcctggcttggttccgcttctgttcattattgtggttgtatttacagcattgtccattctaag

Basic information

species Zea mays
transcript GRMZM2G152457_T05
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152457_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g33850.2 (Oryza sativa), 5'ss of exon 8
GATTGATGTTGTAAACCAAATCCATGGCGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAgtactcagattcatcagtttcatatctaaacagctatgactctcctggcttggttccgcttctgttcatt---attgtggttgtatttacagcattgtccattctaag
|||||||||||  || |||||    || |||||||||||||||||||||||||||||||||||||||| | ||   |||   |||||||||||||||||||||||| ||||||||||||||||| ||| | |||| |||||||| || || ||||||     ||| ||| |||||||||                
GATTGATGTTGCGAATCAAATTGGCGGTGTGCCTGTTGACTGGGCATTGGGTGCTTTCATTGTGCAGAAGGCGTCAAACCAGACAGAgtactcagattcatcagttccatatctaaacagctattactattctgggttggttccactcctcttcatttccgctgtcgttctatttacag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32940231|gb|CF045050.1|CF045050
EST:     GACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGA                         GTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTA
genomic: GACTGGGCATTGGGTGCTTTCATTGTGCAGACGACGATGAACAGAACAGAgtactcagat ... ccattctaagGTGGAGAAAACCTCGTCTGAAGACGATCTACGATATGGAGAAAGGCAGGTA