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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttcttctccccttcacccattctccccgaagccgtgacatttatttggttattatgccgcggccgacag

Basic information

species Zea mays
transcript GRMZM2G150209_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150209_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g56210.1 (Oryza sativa), 5'ss of exon 7
GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttct--tctccccttcacccattctccccgaagcc--gtgacatttatttggttattatgccgcggccgacag-----------------------
|||||| || || ||||| |||||||||| ||  |||| | |||||||| |||| || |||||||||||||| ||||  ||  |||||  ||||||          ||     |  || | ||  || | |            |||                       
GGGTCTAAAAGCCTGGATAGCCACACATCGTCACCCACAGTATCAGAAATCAGACACGTCTGCTAGAGgtttcttctgatcctccctttgcccatttatgttaggacctaaaaatgttaaattatttgtca-attatttttagcagttctgcttcaagtttcgcttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110508237|gb|EE018470.1|EE018470
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAG
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGT-GGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAG
EST: gi|26558397|gb|CA830632.1|CA830632
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|149105392|gb|EE290900.2|EE290900
EST:     TGCCACACATCCTCCACCCCTGCATCAGAAACCAGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78085956|gb|DV514349.1|DV514349
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|149076762|gb|EE165408.2|EE165408
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|71763175|gb|DR961112.1|DR961112
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|6469019|gb|AW191795.1|AW191795
EST:     TGCCACACATCCTCCNCCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCCCAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|67023920|gb|CO452669.1|CO452669
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAAAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|8930109|gb|BE224947.1|BE224947
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|87156906|gb|DY401695.1|DY401695
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|110963433|gb|EE183333.1|EE183333
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5325088|gb|AI783279.1|AI783279
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5846898|gb|AI999981.1|AI999981
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|110209031|gb|EC890928.1|EC890928
EST:     TGCATCAGAAACCAGGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCATCAGAAACCA-GAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|22133528|gb|BQ833762.1|BQ833762
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211125410|gb|FL031448.1|FL031448
EST:     TGCCACACATCCTCCANCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|76916674|gb|DV166495.1|DV166495
EST:     TGCCACACATCCTCCACCCCTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211094011|gb|FL456459.1|FL456459
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|91870113|gb|EB400708.1|EB400708
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATTTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78084663|gb|DV513056.1|DV513056
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGGGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|74238912|gb|DT646826.1|DT646826
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|60291833|gb|DN190072.1|DN190072
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78087169|gb|DV515562.1|DV515562
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211134459|gb|FL464550.1|FL464550
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|18383494|gb|BM416694.1|BM416694
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|211233125|gb|FL455326.1|FL455326
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGA-GGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78087974|gb|DV516367.1|DV516367
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|1366570|gb|W59832.1|W59832
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78104490|gb|DV522908.1|DV522908
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|94475807|gb|EB704765.1|EB704765
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|78122727|gb|DV541111.1|DV541111
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|18383699|gb|BM416899.1|BM416899
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|88750015|gb|DY534156.1|DY534156
EST:     CAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: CAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|32803874|gb|CD956110.1|CD956110
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|5566698|gb|AI881714.1|AI881714
EST:     TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAG                         GTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGGGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
EST: gi|28982677|gb|BQ539500.2|BQ539500
EST:     TGCCACACATCCTCCACCATTGCATCAGAAACCAGAGACATCTGCTAAAG                         GTACTGTGTGAAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA
genomic: TGCCACACATCCTCCACCACTGCATCAGAAACCAGAGACATCTGCTAGAGgttttttctt ... cggccgacagGTACTGTGTGGAGGGCGAAGGGTTCGTCGAGCGGCACAACCCCAGTGGAGA