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CATCATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaattcttctttgatcacatatcaatatgatgatataattgattaatccacaatactgtctgtataacacgcctttctaaatgctattggcatg...
species | Zea mays |
transcript | GRMZM2G149520_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTCTTTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAEST: gi|32802066|gb|CD954302.1|CD954302
genomic: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
EST: GATCCTGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAEST: gi|31354437|gb|CD438794.1|CD438794
genomic: GATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
EST: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAEST: gi|31354086|gb|CD438443.1|CD438443
genomic: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
EST: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTAATTCTTGCT
genomic: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaattcttctttgatcacatatcaatatgatgatataattgattaatccacaatactgtctgtataacacgcctttctaaatgctattggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG