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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag

Basic information

species Zea mays
transcript GRMZM2G149238_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag
|| || ||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| ||  | |  |||| |   ||    | |  |    ||| || ||| || | ||    ||| |     |        |||  | |   | ||||
GATTTCAAGATTCAGAACATTGTTGGCTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagttgagtccttgcatgccttt---ttaggacgcctttcacatttgttat-gttgttcttat----gtcctgtgccttttgtgt---taacag

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 6
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag
||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| ||  |||  |||| | ||||   |  | | ||| ||| || | | || |     |  ||||      |||     |  | ||||| || |||
GACTTCAAGATTCAGAACATTGTTGGTTCTTGTGATGTTAAATTTCCAATCAGGCTGGAGGGACTTGCATATTCTCATGGTGCTTTCTCAAGTgtaagttgaatccttgcatgtttttttaggata-tttctttcacatatgttatg----ctattctcatgtcttg-----tgccttttgtcttccag

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 6
-GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttt--tcatttgttttacag-------
 || ||||||||||||||||||||||||||||||||||||||||| || ||| | || ||||| ||||||||||| |||||||| |||||||||||| ||   |        | || |    |     | ||  |      ||| || |          |  || ||    |  |  | ||  ||  || |        
GGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTCCCCATTCGACTGGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGtgtaagtgtgaaa------tgttataatcttctgttcttcctggtgaatttcttggaaaaatggtctacaaattcctgtcctagttatcagtactatatatggtcc

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G28780.1 (Glycine max), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtc-------caatgattgcttattttggcatcacaatttttttta----cctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag
|| |||||||||||||| |||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||| ||| |||| |||||||||||| ||        |||| ||    | ||||  |     |||||  |  |       |  |       |||   | | | | |     |  |  || || |      
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGTgtaagtgtgaaatgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcag--tcctatatatggtc-----

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtc-------caatgattgcttattttggcatcacaatttttttta----cctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag
|| |||||||||||||| |||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||| |||||||| |||||||||||| ||        |||| ||    | ||||  |     |||||  |  |       |  |       |||   | | | | |     |  | ||| || |      
GATTTTAAGATTCAGAACATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtgaagtgcaataatcatctgtttttcctggtgaatttcatggaaaaatggtcctcacaaattcctgccctagtaatcag--tcctacatatggtc-----

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G06370.1 (Glycine max), 5'ss of exon 3
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttt-tttgtctcccttcttggaatttgacatttttcatttgttttacag---
|| || || |||||||  ||||| |||||||||||||| ||||| || || | ||| ||||| ||||| ||||| |||||||| |||||||||||| ||       ||   | |||||| |  | ||||  |   |     ||  |   |      | ||  |     | ||||||  |||     |  |   
GATTTCAAAATTCAGATCATTGTCGGCTCTTGTGATGTCAAGTTCCCCAT-ATGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttttattttttattttttgggaaaataattcataggattggattggtccctggtgacttttatatcaaaatattttttgttttcacaatcgatg

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag------------
|| || || |||||||| ||||| |||||||||||||| ||||| || ||  |||| ||||| ||||| ||||| |||||||| |||||||||||| ||    |  ||  ||  ||||| |  | ||||  |         ||  ||        | ||   |||  | ||||||  ||  ||| |||             
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagt----tagttattt--tttgggaaaataattcatagggttggattggttactggtgatttttacatt--aaatttttttttgctttcacaatcaatgtttggc

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttg---tctcccttcttggaatttgacattt--ttcatttgttttacag-
|| || || |||||||| ||||| |||||||||||||| ||||| || ||  |||| ||||| ||||| ||||| |||||||| |||||||||||| ||    | |||  ||        |      |   |  |  ||||| | |     | |    | ||   | |  |  |||   |    || | |  || 
GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagttt--taattttttgggaaaataaattggtccctggtgacttttatatcagaatattttgttttcacaatcaatgtttggctatcctgatgtttagg

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT3G13445.1 (Arabidopsis thaliana), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatga--ttgcttattttggcatcacaattt--tttttacctttttttttgtctcccttcttggaatttgacatttttcat-ttgttttacag----
|| || ||||||||||||||||| || ||||||||||| || || || || || ||||| || ||||| || ||||| | ||| |||||||||||  ||    | |  ||    |||| |   |||         |||||    |      ||    ||  | |  |||     | | |||| |||   |   |    
GATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCACGCTGCTTTCTCAAGTgtgagtgatcttaacttatacatttagtagtcaaggaccgacttttagagataaaaacgttgtgctgatggccattacctctctctcatattggcgtgtggttag

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcaca-attttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag-
|| |||||||| ||||| ||||| ||||| |||||||| || || || ||||||||||| || ||||| || |||||| |||| ||||||||||||     | ||||  |     |||  |||| | ||  || | || |   | ||  ||   ||  |  || |   || | | ||||   |  | |   
GATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAGTGCTTTCTCAAGTgta-----agtgatctcaagcattgtgatcatatatacttgtaacatgggtgttaatcggtctgat--gattcatacctctctcatcattgatgccag

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 7
GACTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTTCCAATTAGGCTTGAGGGCCTTGCCTATTCTCATGGTGCCTTCTCAAGTgtatgtccaatgattgcttattttggcatcacaattttttttacctttttttttgtctcccttcttggaatttgacatttttcatttgttttacag--------
|| |||||||||||||| || |||||||| |||||||| || || || || |||||||| |||||||| ||||||||||||||||| || || ||| ||   ||||    || |||| | |   ||||| ||| |   ||||| | |       |       | |||  |  |    |||    ||  |        
GATTTTAAGATTCAGAACATAGTTGGCTCCTGTGATGTTAAATTCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagt--gatgaca--ttgttttcggagttcaattatttatttatttttctgtaaaaatgtgaaccatacttgggaagtcatgtttaaactaaggttggaaca