Sequence
atgc intronic sequence ATGC exonic sequenceGTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAGATCCATAATGCATTTGGGCTTTCAGgtaataacctttgtgattatcttatatgaaacttttgcacatattgagctgttggctagattatcatctttgattgcttttctgctgaaagcaattgtga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G148773_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 7
GTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAGATCCATAATGCATTTGGGCTTTCAGgtaataacctttgtgat---tatcttatatgaaacttttgcacatattgagctgttggctagattatcatctttgattgcttttctgctgaaagcaatt-gtga
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GTCATGGAAAAGCTCGTAGACATTGTGCATTTCTTACATTTGGAGATCCATAATGCCTTTGGGCGCTCAGgtattaggcttcatgactgctatttactattaaaattatcatcatat----ctattgtttctatgcctcccttagcaatatgatctgctaacagttttccatga
upper sequence: GRMZM2G148773_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 7
GTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAGATCCATAATGCATTTGGGCTTTCAGgtaataacctttgtgattatcttatatgaaacttttgcacatattgagctgttggctag-attatcatctttgattgcttttctgctgaaagcaattgtga
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GTAATGGAGAAGCTTGTAGACATTGTGCATTTCTTACATTTGGAGATACATGATGCCTTTGCTACTGCTGgtatgaattccaaacgttgataattttttttcccctgctcatagtaacctgaaggcctgcatcactgtccatcatctcttga-tatgggagaaaaaggagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17930104|gb|BM267064.1|BM267064EST: GGAGATCCATAATGCATTTGGGCTTTCAG ACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAG
genomic: GGAGATCCATAATGCATTTGGGCTTTCAGgtaataacct ... cactatgcagACAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAGATCCATAATGCATTTGGGCTTTCAGgtaataacctttgtgattatcttatatgaaacttttgcacatattgagctgttggctagattatcatctttgattgcttttctgctgaaagcaattgtga
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATC