1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagcctagtaatctgaattagtttatgattgcaccgagtcacgcgttcgggaagcaaaggcatgaagggagtttgccgtggtaatcgaatctcgtgacatgtttgaccttgcgttttcag
species | Zea mays |
transcript | GRMZM2G147882_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924156|gb|CF028968.1|CF028968
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|211415426|gb|FL477512.1|FL477512
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924444|gb|CF029256.1|CF029256
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32858736|gb|CD998417.1|CD998417
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGEST: gi|32923806|gb|CF028618.1|CF028618
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATG
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924110|gb|CF028922.1|CF028922
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAGCTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|71299018|gb|DR785501.1|DR785501
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGTTCAGCTTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTTTCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32923874|gb|CF028686.1|CF028686
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924334|gb|CF029146.1|CF029146
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32923638|gb|CF028450.1|CF028450
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|76287314|gb|DV026882.1|DV026882
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|71429425|gb|DR810475.1|DR810475
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32858735|gb|CD998416.1|CD998416
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32923912|gb|CF028724.1|CF028724
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGCCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32923869|gb|CF028681.1|CF028681
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32923708|gb|CF028520.1|CF028520
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|32924079|gb|CF028891.1|CF028891
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTEST: gi|74241069|gb|DT648983.1|DT648983
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
EST: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG CGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
genomic: GACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagccta ... gcgttttcagCGGATTTATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGGgtaaagcctagtaatctgaattagtttatgattgcaccgagtcacgcgttcgggaagcaaaggcatgaagggagtttgccgtggtaatcgaatctcgtgacatgtttgaccttgcgttttcag
- - - - - - AAGAAC