Sequence
atgc intronic sequence ATGC exonic sequenceAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 7
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaa--tgtaattcaatatttgattatacag
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AGGGAGTGTTTTCAACAGTTGTCCGAGCAAAAGATCTTAAAGCTGGGAAGGATGATCCCGAAGAGGTTGCTATTAAGATTATTCGCAACAATGAGACAATgtgagttaagcttcctagaagtatttttggtttacttgtagcatggaacatgtacatgacccttttatttgatatttgattatacag
upper sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 7
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatg------ttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacag-----------------------
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AAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAAGCTGAACTAGGTGAACCTGAGGAAGTGGCTATAAAAATTATTCGGAACAATGAGACAATgtaagtggtcttctctaggaccggacaaattttatcaaaattcttatcaagtgatgtttgatttatcttcctaagagttgtgaatgtctcactatcatatcacgttttgtgtag
upper sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S250_28V6.1 (Physcomitrella patens), 5'ss of exon 6
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatattt-gattatacag-----------------
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GTGGTGTGTTTTCCACTGTGGTTCGAGCGCATGATTCGAAGGCAGGTAAAGATGATCCTGAAGAAGTCGCGATCAAGATCATTCGCAACAATGACACCATgtaagtt---cttcgtttttttctgcttttcaaaaatttccttctgagaagccttctgattgtgtttctttagttaggattcttagtgcatgtgaggtttaat
upper sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S213_125V6.1 (Physcomitrella patens), 5'ss of exon 6
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagtt---aagctccctagagatgttctcc---tgcaattt--ctactatggaaaaca-aataggaatgtaattcaatatttgattatacag------
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GCGGTGTATTTTCAACTGTGGTTCGAGCGTATGACACAAAAGCAGGTAAAAATGATCCCGAAGAAGTTGCAATCAAGATCATTCGCAACAATGATACTATgtaagttttcaacactcctacttccattttccatttgaaatcttgcgattgtgtatcccatggtccggtttttgttacatgtgaggtttcgtagctgtacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67021773|gb|CO450522.1|CO450522EST: GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAAT GTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC
genomic: GATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaag ... gattatacagGTACAAGGCTGGTAAGCAAGAGGTTTCAATATTGGAAAAACTTGCAAGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGCGAGTAAGGATGATCCTGAAGAAGTTGCCATCAAAATTATTCGCAACAATGAGACAATgtaagttaagctccctagagatgttctcctgcaatttctactatggaaaacaaataggaatgtaattcaatatttgattatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT