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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattctcagttgatcttctcttcctaacgctgtggtcaggatcatcgcataaccaccattatgttcattgtttatttag

Basic information

species Zea mays
transcript GRMZM2G146472_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146472_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g06760.1 (Oryza sativa), 5'ss of exon 6
ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattctcagttgatcttctcttcctaac---gctgtggtcaggatcatcgcataaccaccattatgttcattgtttatttag
 |||||||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||    |||||   ||||  |  ||||||        | ||   || |  | |   | |  || | |   ||||| |   ||||||
GTACCAGCCACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGgtattgttctcgcatgattctgacttcctgctttaaatatgactagcacaaccatttgatgacaaattccttcatggaa-atttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60398720|gb|DN231536.1|DN231536
EST:     TATGATCATGAAG                         AATCGTATCCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGC
genomic: TATGATCATGAAGgtgacattct ... gtttatttagAATCGTAT-CCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGC
EST: gi|28930818|gb|CB334179.1|CB334179
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31363344|gb|CD447701.1|CD447701
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|15214979|gb|BI431119.1|BI431119
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|22542105|gb|BU092543.1|BU092543
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32841469|gb|CD981150.1|CD981150
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGC
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCG-TATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGC
EST: gi|19822219|gb|BQ048243.1|BQ048243
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839778|gb|CD979459.1|CD979459
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATTGTATCCCACTGGTCGTGGAAGAGGACGTGTTGCTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|76930615|gb|DV172453.1|DV172453
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839619|gb|CD979300.1|CD979300
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|71756347|gb|DR954284.1|DR954284
EST:     TGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: TGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|24773481|gb|CA408735.1|CA408735
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32837442|gb|CD977120.1|CD977120
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGNACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32831818|gb|CD971496.1|CD971496
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGGCGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|149101883|gb|EE187954.2|EE187954
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32828756|gb|CD968434.1|CD968434
EST:     ACCTATCCCAGCTGAAGAGGTGAAAC-TGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|24774011|gb|CA409265.1|CA409265
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGCGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|76918295|gb|DV167234.1|DV167234
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|56462114|gb|CK986412.1|CK986412
EST:     ACCTATCCCAACTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31356464|gb|CD440821.1|CD440821
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|4753393|gb|AI657303.1|AI657303
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|60345407|gb|DN212380.1|DN212380
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31359395|gb|CD443752.1|CD443752
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|148933612|gb|EC877493.2|EC877493
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|24774111|gb|CA409365.1|CA409365
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|67031337|gb|CO460086.1|CO460086
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|14202293|gb|BG835970.1|BG835970
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|24961547|gb|CA483556.1|CA483556
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31363502|gb|CD447859.1|CD447859
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31354397|gb|CD438754.1|CD438754
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|166698581|gb|EG294767.1|EG294767
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTG
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTG
EST: gi|24773581|gb|CA408835.1|CA408835
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|29577050|gb|CB617162.1|CB617162
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAAGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|148939817|gb|EC884519.2|EC884519
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|211501106|gb|FL128526.1|FL128526
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32829344|gb|CD969022.1|CD969022
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|60344926|gb|DN211899.1|DN211899
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839644|gb|CD979325.1|CD979325
EST:     CTATCCCAGCTGAAGAGGTGAAAC-TNNGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: CTATCCCAGCTGAAGAGGTGAAACCT--GCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839779|gb|CD979460.1|CD979460
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839620|gb|CD979301.1|CD979301
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|148942045|gb|EC887040.2|EC887040
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|31364520|gb|CD448875.1|CD448875
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839780|gb|CD979461.1|CD979461
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|149101884|gb|EE287439.2|EE287439
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
EST: gi|32839645|gb|CD979326.1|CD979326
EST:     ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAG                         AATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA
genomic: ACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattct ... gtttatttagAATCGTATCCCACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGATCATGAAGgtgacattctcagttgatcttctcttcctaacgctgtggtcaggatcatcgcataaccaccattatgttcattgtttatttag

- - - - - - - -  CAGCTG
- - - - - - - - - AGCTGA
- - - - - - - - - - CTGAAG
- - - - - - - - - -  TGAAGA
- - - - - - - - - - -  AAGAGG