Sequence
atgc intronic sequence ATGC exonic sequenceGTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 5'ss of exon 7
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgt-ttgctatgcttagcatcttttacatgctttttcag------------------------------------
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GCTATACTTCAACTTTAAGGAACAATGTCCGCTCACGTGCTTGGGGTGCTGGTATTGGTTGTAGCTTTCGCATAGAACGCTGCTGCATTGTTAAGgtattaagactgtataagataac--atataaggc-tactgtgttctcctt-ttgctttgagcaaaatttcagtgctttcttttgttttaatctgctgatgtaaaaaccttttattgaccactgctccatagattgtttgcttagtttgtattacatgctttgcag
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G35720.1 (Glycine max), 5'ss of exon 6
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
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GCTATATTTCTACACTGAGAAACAATGTCCGTTCCCGTGCTTGGGGTGCAGCAATTGGTTGTAGTTATAGAGTGGAGCGGTGTTGCATTGTGAAGgtag----tatcag------aacccctgcaaagtctcctattgtccttttgcaattttcagcc-catgaaatta--tctgattcattgca-gcttcatatgctttaaatgtgat--------------
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G33300.1 (Glycine max), 5'ss of exon 6
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
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GCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGCAATTGGTTGTAGTTATAAAGTTGAGCGGTGCTGCATTGTAAAGgtaataa-tataagctgtgcaa--acttaaaatccttcatcctttgaacttttgtccctgaagtcat-------gttctcttcattgaaatatcatctactgtagatgct------------------
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G28530.1 (Glycine max), 5'ss of exon 5
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
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CCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGCAATTGGTTGTAGTTATAAAGTTGAGCGGTGCTGCATCGTAAAGgta-gtaataaaagctgtgcaaactgtaaaatccttcttcctttgaactt-ttgccctgaaagtcattt-----gttctcttcattgaaacatcatctactttagat---------------------
upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 6
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
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GCTACATTTCTACACTGAGAAACAATGTCCGATCCCGTGCTTGGGGGGCTGCAATTGGTTGTAGCTACCGTGTCGAACGGTGCTGCATTGTGAAGgt---------gataaacacctctagt-tgagttactttttctccatgtcataagtttcaagtatttaatagtga----atttca--gagtgtcatcagtgcctctaaccatacat------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60397960|gb|DN230776.1|DN230776EST: CTGCATTTTCAAG AAAGGTGGTGGCACCATTNGGTCTTGAGCCACGCCTTAGCCACGTGTCAGC
genomic: CTGCATTTTCAAGgtatgaacta ... gctttttcagAAAGGTGGTGGCACCATT-GGTCTTGAGCCACGCCTTAGCCACGTGTCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATACTTCAACACTGAGGAACAATGTGCGTTCACGTGCTTGGGGTGCTGGGATTGGTTGTAGCTTTCGGATTGAACGTTGCTGCATTTTCAAGgtatgaactatgaaggatgcagccagtatagaacatacacttttgatgtggttaccttcaggaacattttactggctctatttcatggaatgtttgctatgcttagcatcttttacatgctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC