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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGAGAAATAGTCGATACTGATTTATTTGGTTCACAAGAGAATAGGAAGTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctttctctgaaaaattacttggtgtttaccatataatatactcatataatattaccgcagctattagcttcaaaggctgatacagaaaactag...

Basic information

species Zea mays
transcript GRMZM2G146041_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649764|gb|BM498583.1|BM498583
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|87152405|gb|DY397194.1|DY397194
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|78027270|gb|DV495657.1|DV495657
EST:     TTTTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|19821907|gb|BQ047931.1|BQ047931
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATGGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|12973731|gb|BG268627.1|BG268627
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCCCCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|67042856|gb|CO469111.1|CO469111
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|211474366|gb|FL184467.1|FL184467
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|19351728|gb|BM896260.1|BM896260
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|19351269|gb|BM895801.1|BM895801
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
EST: gi|19821942|gb|BQ047966.1|BQ047966
EST:     GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTG                         GGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG
genomic: GTCTTCCACAGCAACAACACATACGGATGATCAGAAATTGGTTGATTTTGgtatgctctt ... tgtctaacagGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACAGACG